PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G065300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 162aa    MW: 18258.4 Da    PI: 6.7723
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G065300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.69.9e-5529124297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+rimk++lP  akisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl++yr
  Manes.05G065300.1.p  29 KEQDRLLPIANVGRIMKQILPPSAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYR 118
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e ege+
  Manes.05G065300.1.p 119 EQEGER 124
                          ***997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-5325143IPR009072Histone-fold
SuperFamilySSF471133.11E-4031142IPR009072Histone-fold
PfamPF008081.8E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.5E-206280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.5E-208199No hitNo description
PRINTSPR006159.5E-20100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVDNIGNNSE RSCQKYSFAG ASSEDGIIKE QDRLLPIANV GRIMKQILPP SAKISKEAKE  60
TMQECVSEFI SFVTGEASDK CHKEKRKTVN GDDICWALAT LGFDDYAEPL KRYLHRYREQ  120
EGERGSHRAS NNIEEKDDYR GDQSMKSIAS LNFPVNSRRF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B4e-4428119192Transcription factor HapC (Eurofung)
4g91_B4e-4428119192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082708.12e-87PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO822481e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A067K7772e-87A0A067K777_JATCU; Uncharacterized protein
STRINGPOPTR_0014s12710.16e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-63nuclear factor Y, subunit B5